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Tim Althoff receives the 2019 SIGKDD Dissertation Award

We are delighted to announce that our former graduate student, Tim Althoff, received the 2019 SIGKDD (Conference on Knowledge Discovery and Data Mining) Dissertation Award. Dr. Althoff was recognized for his work on data mining to improve health and well-being. While Dr. Althoff was at Stanford University, he was advised by Mobilize Center faculty member Jure Leskovec. Now Dr. Althoff is an assistant professor at the University of Washington. You can find the slides from his talk at SIGKDD here. All the code and data for the presented papers are also available:

Podcast Features Women Leaders at Intersection of Data Science and Genetics

Listen to women leaders across the data science profession, as they share their advice, career highlights, and lessons learned along the way. In season one, the Women in Data Science (WiDs) podcast takes a unique look into the lives of two women working at the intersection of data science and genetics:

  • Chiara Sabatti, professor of biomedical data science and of statistics at Stanford University, discusses trends in data science in genetics. Watch now
  •  Nilah Monnier Loannidis, a postdoc in the Department of Biomedical Data Science at Stanford University, discusses the role of data in her career and new ways to collect data. Watch now

This podcast is brought to you by the Stanford Institute for Computational & Mathematical Engineering (ICME) and the Stanford School of Engineering. Support for this podcast and other Women in Data Science initiatives has been provided by Intuit, Microsoft, SAP, Walmart Labs, and Western Digital. The Mobilize Center is one of the initial sponsors of the Women in Data Science Conference. To listen to all the WiDS episodes, click here.

“Our Voice” citizen-science project featured in 3M Particles website

Mobilize Center faculty member Dr. Abby King and her team’s “Our Voice” citizen-science project is featured in 3M’s Particles website. The project engages community members in improving their neighborhoods and making them more conducive for physical activity. Using a tablet-based app, people can take geo-coded photos and videos to highlight for policy makers and community leaders which neighborhood areas are in greatest need of improvement. This project is synergistic with Dr. King’s earlier study published in Nature with other Mobilize Center collaborators that analyzed data from 720,000 people and found a correlation between a location’s walkability and activity levels. Read more

The Mobilize Center Funds 6 Students to Attend This Year’s Machine Learning for Healthcare Conference

This year the Mobilize Center supported 6 students to attend The Machine Learning for Healthcare Conference (MLHC) at Stanford University on August 17-18, 2018.

Congratulations to Jeeheh Oh, Jacob Fauber, Bryan Lim, Xinyuan Zhang, Bryce Woodworth, and Zelun Luo! We welcome you to read their papers below:

Bryan Lim, Oxford University. Disease-Atlas: Navigating Disease Trajectories using Deep Learning

Bryce Woodworth, UC San Diego. Preference Learning in Assistive Robotics: Observational Repeated Inverse Reinforcement Learning

Jacob Fauber, UC Riverside. Modeling “Presentness” of Electronic Health Record Data to Improve Patent State Estimation

Jeeheh Oh, University of Michigan. Learning to Exploit Invariances in Clinical Time-Series Data using Sequence Transformer Networks 

Xinyuan Zhang, Duke University. Multi-Label Learning from Medical Plain Text with Convolutional Residual Models

Zelun Luo, Stanford University (PI: Fei Fei). Computer Vision-based Descriptive Analytics of Seniors’ Daily Activities for Long-term Health Monitoring

Journal Article on Best Practices for Machine Learning in Human Movement Biomechanics

Our article “Machine Learning in Human Movement Biomechanics: Best Practices, Common Pitfalls, and New Opportunities” in the Journal of Biomechanics has just been published on-line.  In the article, we review published studies that apply machine learning to neuromuscular and musculoskeletal diseases, identify best practices and common pitfalls, and also provide recommendations for training and evaluating machine learning models. We hope the community finds this to be a useful guide for incorporating machine learning into biomechanics.

Workshop: Rapid Biomedical Knowledge Base Construction from Text

Do you want to automatically identify relationships mentioned within the scientific literature, e.g., which biomarkers are related to a particular disease? Do you want to analyze clinical notes to extract patient-reported functional capabilities related to a given treatment? 

Snorkel enables you to accomplish these tasks. It automatically extracts information from unstructured data sources, such as the scientific literature and clinical notes, without using large, labeled training datasets, which are often lacking in biomedicine. You can learn how to use the Snorkel platform in a hands-on workshop at Stanford University on November 6-7, 2018. On the first day, participants will learn about the Snorkel workflow through brief lectures and hands-on activities. On the second day, participants will utilize their new knowledge to apply Snorkel to a real-world problem using the scientific literature or electronic health record data. To attend, submit your application for consideration by Friday, September 21st, 2018. Learn more

Biomechanics and Machine Learning: Current Successes and New Opportunities

Apoorva Rajagopal from the Mobilize Center will be giving a talk on “Biomechanics and Machine Learning: Current Successes and New Opportunities” at the upcoming American Society of Biomechanics (ASB) Conference in Rochester, Minnesota at the Mayo Civic Center. The talk is part of the “Next Gen Sensors & Data Symposium” on the morning of August 9th (Thursday), 9:30 – 11:00am, in Ste 105. The symposium will open with a short intro talk by Bryan Conrad from Nike followed by 10-minute talks from each of five speakers, a moderated panel discussion, and an open discussion with the audience.

Trevor Hastie elected to the National Academy of Sciences

The Mobilize Center is delighted to announce that Mobilize Center faculty member Trevor Hastie was elected to the National Academy of Sciences. Dr. Hastie is an outstanding statistician, known for his work in applied regression and classification methodologies and more recently his efforts in data mining and prediction problems in biology and medicine. Within the Mobilize Center, he has worked with our trainees to demonstrate an association between physical activity and knee cartilage microstructure, predict the progression of movement disorders in children with cerebral palsy, and predict osteoarthritis progression. Please join us in congratulating Dr. Hastie for being a newly elected member of the National Academy of Science!